https://impilo.diploide.net/ 2026-05-01T18:38:15+00:00 https://impilo.diploide.net/ https://impilo.diploide.net/lib/exe/fetch.php?media=wiki:logo.png text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:blast_2225&rev=1622316954&do=diff Installation of BLAST+ 2.2.25 Additional libraries No other librarie is necessary. Procedure For the past few years, two concurrent versions of NCBI BLAST was available: BLAST and BLAST+, a complete C++ refactoring of the BLAST code. At the time and although that it offered significant advantages (easier mnemonics and speed of analysis), BLAST+ had the problem of needing lots of storage space, which for a distro project like Impilo, has profound impacts text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:clustalw_21&rev=1622316954&do=diff Installation of CLUSTALW 2.1 Additional libraries None are required. Procedure Here is the procedure to install CLUSTALW from its source code: * The source code archive was downloaded and put under /home/bioubuntu, decompressed and the created folder is moved toward text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:clustalx_21&rev=1622316954&do=diff Installation of CLUSTALX 2.1 Additional libraries The following libraries are required: * libqt4-dev % sudo apt-get -y install libqt4-dev Procedure Follow this procedure to install CLUSTALX from source code: * The archive with the source code has been downloaded from the web site into text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:develop_impilo_11.04&rev=1622316954&do=diff Development environnements for Impilo 11.04 Here is the content of the file named develop_module.txt used to build Impilo 11.04. # # Developer's tools for Impilo # jedit build-essential gfortran sun-java6-jdk sun-java6-plugin bioperl python-biopython php5-cli php5-gd php5-imagick php5-mysql php-pear #ia32-libs Only for 64-bits VMs xorg-dev text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:emboss_640&rev=1622316954&do=diff Instructions d'installation et de configuration de EMBOSS 6.4.0 Additional libraries and pre-installation procedures The following librairies are necessary to compile EMBOSS as well as the EMBASSY applications: * libx11-dev * libgd2-xpm-dev text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:graphics_impilo_11.04&rev=1622316954&do=diff Image acquisition and drawing applications for Impilo 11.04 Here is the content of the file named graphics_module.txt used to build Impilo 11.04 # # Graphics tools for Impilo # gimp gimp-help-fr gimp-help-en gimp-data-extras gimp-gutenprint gimp-plugin-registry inkscape imagemagick xsane gimp2.0-quiteinsane text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:internet_impilo_11.04&rev=1622316954&do=diff Internet applications selected for Impilo 11.04 Here is the content of the file named internet_module.txt used for building Impilo 11.04. # # Minimal Internet utilities for Impilo # firefox firefox-gnome-support firefox-locale-fr thunderbird thunderbird-gnome-support thunderbird-locale-fr filezilla sshfs text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:office_impilo_11.04&rev=1622316954&do=diff Office-like applications for Impilo 11.04 Here is the content of the office_module.txt file used for building Impilo 11.04. # # Office-like applications for Impilo # abiword abiword-plugin-grammar abiword-plugin-mathview aspell-en aspell-fr evince gnumeric gnumeric-plugins-extra gnumeric-doc language-support-fr language-pack-fr language-support-en language-pack-en ttf-liberation text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:primer3_223&rev=1622316954&do=diff Installation of Primer3 2.2.3 Additional libraries No additional library is necessary. Procedure Here is the procedure to install Primer3 from source code: * The archive with the source code is downloaded from its website into /home/bioubuntu, decompressed and the resulting folder is moved into text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:seqtools_4.4.1&rev=1622316954&do=diff Installing Dotter Additional Libraries You will need the following libraries to compile and run the applications found in the SeqTools package (which now include Dotter): * libgtk2.0-dev * libcurl4-openssl-dev % sudo apt-get install libgtk2.0-dev libcurl4-openssl-dev text/html 2021-05-29T19:35:54+00:00 Anonymous (anonymous@undisclosed.example.com) https://impilo.diploide.net/doku.php?id=en:install:11_04_a11_build:xfcegui_impilo_11.04&rev=1622316954&do=diff Impilo 11.04 - Xfce4 Environment Here is the content of the file named xfcegui_module.txt use to build Impilo 11.04. # # Modules for minimal GUI install # xfce4 xfce4-goodies gdm tango-icon-theme # # Modules for printing support # cups cups-driver-gutenprint foomatic-filters ghostscript-cups cups-pdf foomatic-db system-config-printer-gnome