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Why work so hard to create yet another Linux distro for bioinformatics?

Why work so hard to create yet another Linux distro for bioinformatics?

And a good question it is :-) There are a number of effort out there to do such a thing:

Most of them fail for my needs on one or more of the following points:

  • In many cases, they include out-dated applications or out-dated versions of currently used applications.
  • Some of them are targeting a specific audience, like structural chemists.
  • Very few of them are including a complete documentation package, not only to describe the applications and their use but also to help out a user to select the proper tool for the question to answer.
  • Most of them lack applications in the forefront of integrative biology and/or high throughput transcriptomics and genomics.
  • Some of them do not seem to have active support.
  • Some of them are very specialized, needing a cluster to be used effectively (i.e. Bio roll).

After having a hard look at all of them, I came to the conclusion that I needed to start from scratch to build a bioinformatics distro for teaching my students as well as provide a starting point to build their own bioinformatics server.

Sylvain Foisy 2010/04/18 14:10