Installation de RAxML 7.0.4

No additional library is required.

Here is the procedure to install RAxML from source code:

• The archive with the source code is downloaded from the web in /home/bioubuntu, decompressed and the newly created folder is moved to /opt/bio/sources. Do the same with the easyRAx archive.

• Ce dossier devrait appartenir à root. Les permissions de ce dossier devraient être 755.

% sudo chown -R root:root /opt/bio/sources/RAxML-7.0.4
% sudo chmod 755 /opt/bio/sources/RAxML-7.0.4
% sudo chown -R root:root /opt/bio/sources/easyRAx
% sudo chmod 755 /opt/bio/sources/easyRAx

• Once you are in /opt/bio/sources/RAxML-7.0.4, compilation is easily done:

% sudo make -f Makefile.gcc
% sudo make -f Makefile.PTHREADS

• To make the program accessible to all:

% sudo ln -s /opt/bio/sources/RAxML-7.0.4/raxmlHPC /usr/local/bin/raxmlHPC
% sudo ln -s /opt/bio/sources/RAxML-7.0.4/raxmlHPC-PTHREADS /usr/local/bin/raxmlHPC-PTHREADS

• To use RAxML via the easyRAx script, do the following things:

% sudo chmod ugo+x /opt/bio/sources/easyRAx/easyRAx.pl
% sudo ln -s /opt/bio/sources/easyRAx/easyRAx.pl /usr/local/bin/easyRAx

• You need do do a slight edit to this script by changing where Perl is living:

#!/usr/local/bin/perl

becomes:

#!/usr/bin/perl