Installation of FSA 1.15.2

Aucune en tant que tel mais certaines des fonctions d'alignement de génome dépendent du trio MUMmer/Exonerate/Mercator. Assurez-vous de les avoir installés

Here is the procedure for installing FSA from source code:

• The archive with the source code has been downloaded from its web location, decompressed into /home/bioubuntu and the resulting folder moved into /opt/bio/sources/.

• The /opt/bio/sources/fsa-1.15.2 folder should belong to root and its permissions should be 755.

% sudo chown -R root:root /opt/bio/sources/fsa-1.15.2

• Once you are in /opt/bio/sources/fsa-1.15.2, compiling is easy:

If you are compiling on a 32-bits platform

% sudo ./configure --with-mummer --with-exonerate CFLAGS=-m32 && sudo make

If you are compiling on a 64-bits platform

% sudo ./configure --with-mummer --with-exonerate && sudo make

• To make sure everyon can use it:

% sudo ln -s /opt/bio/sources/fsa-1.15.2/src/main/fsa /usr/local/bin/fsa