Installation instructions for building the bioinformatics apps in Impilo

As its first goal, Impilo provides on a single server the largest number of bioinformatics applications while also providing the most pertinent documentation on their uses for teaching and academic purposes.

• Dotter
• BLAST
• FASTA

• CLUSTALW 10.04 A10 update
• CLUSTALX 10.04 A10 update
• FSA
• KAlign
• MAFFT
• MUSCLE 3
• T-COFFEE
• STRAP
• JalView

• BEAST
• Gblocks
• Mesquite
• MrBayes
• PHYLIP
• PhyloBayes
• PhyML
• RAxML

• Archeopteryx
• FigTree
• NJPlot
• Tracer
• Treefinder
• TreeViewX

• RNAMotif
• tRNAScan-SE

• Erpin
• UNAFOLD

• TM4 Spotfinder
• TM4 MIDAS
• RMAExpress
• TM4 MeV

• Cytoscape
• Pathvisio

• JChemPaint 10.04 A10 update
• Jmol 10.04 A10 update
• Pymol 10.04 A10 update
• Sirius

• ImageJ 10.04 A10 update

• R 10.04 A10 update
• Bioconductor 10.04 A10 update

• Artemis 10.04 A10 update
• EMBOSS / EMBASSY / Jemboss 10.04 A10 update
• Readseq 10.04 A10 update

• Primer3 10.04 A10 update
• Primer3Plus

• InGAP 10.04 A10 removed
• MIRA 3 10.04 A10 update
• SAMtools 10.04 A10 update
• Staden package 10.04 A10 addition