====== Installation of Treefinder October 2008 ======

===== Additional libraries ===== 

Java, already installed.

===== Procedure =====

Here is the procedure to install Treefinder:

  * After downloading the archive containing the applications and auxiliary files, decompressed the ZIP archive in ''/home/bioubuntu'' and move the newly created folder in ''/opt/bio/sources'':

<code bash>
% sudo mv Treefinder /opt/bio/sources
</code>

  * This folder should belong to ''root'' and its permissions should be set to ''755''.

<code bash>
% sudo chown -R root:root /opt/bio/sources/Treefinder
% sudo chmod 755 /opt/bio/sources/Treefinder
</code>

  * You need to edit the ''tf'' et ''treefinder'' scripts so that they both use a proper ''$TFDIR'' environment variable by adding this line:

<code>
export TFDIR=/opt/bio/sources/Treefinder
</code>

  * To make these programs available to all:

<code bash>
% sudo ln -s /opt/bio/sources/Treefinder/tf /usr/local/bin/tf
% sudo ln -s /opt/bio/sources/Treefinder/treefinder /usr/local/bin/treefinder
</code>

  * To add Treefinder in the Impilo application menu, you need to edit the Xfce4 configuration file:

<code bash>
% sudo xfce4-menueditor /etc/xdg/xfce4/desktop/menu.xml
</code>

  * The three items to add are :
    * Item: Launcher
    * Name: Treefinder
    * Command: treefinder