====== Installation of inGAP 2.0.1 ======

===== Additional libraries ===== 

Java, already installed.

===== Procedure =====

Here is the procedure to install inGAP:

  * InGAP is distributed in a *.tar.gz archive. This archive is decompressed into ''/home/bioubuntu'' and the resulting folder is moved into ''/opt/bio/sources''.
<code bash>
% sudo mv /home/bioubuntu/inGAP_linux64 /opt/bio/sources
</code>

  * This folder should belong to ''root'' and its permissions set to ''755''.
<code bash>
% sudo chown -R root:root /opt/bio/sources/inGAP_linux64
% sudo chmod 755 /opt/bio/sources/inGAP_linux64
</code>

  * Once you are in ''/opt/bio/sources/inGAP_linux64'', you need to modify the file named ''inGAP'' to make it work in an Impilo installation. Open it in a text editor, erase all the lines present and put these new lines instead:
<code bash>
#!/bin/sh
INGAP_HOME=/opt/bio/sources/inGAP_linux64
java -Xmx1000m -jar $INGAP_HOME/inGAP.jar</code>

  * This script is already executable. You only have to make it available to all users:
<code bash>
% sudo ln -s /opt/bio/sources/inGAP_linux64/inGAP /usr/local/bin/inGAP
</code>

  * To add inGAP to the Impilo application menu, you need to modify the Xfce4 configuration file:
<code bash>
% sudo xfce4-menueditor /etc/xdg/xfce4/desktop/menu.xml
</code>
  * The three things to add are :
    * Item: Launcher
    * Name: inGAP
    * Command: inGAP