====== Installation of FSA 1.15.2 ======

===== Additionnal libraries =====

Aucune en tant que tel mais certaines des fonctions d'alignement de génome dépendent du trio MUMmer/Exonerate/Mercator. Assurez-vous de les avoir installés :-)

===== Procedure =====

Here is the procedure for installing FSA from source code:

  * The archive with the source code has been downloaded from its web location, decompressed into ''/home/bioubuntu'' and the resulting folder moved into ''/opt/bio/sources/''.

  * The ''/opt/bio/sources/fsa-1.15.2'' folder should belong to ''root'' and its permissions should be ''755''.

<code bash>
% sudo chown -R root:root /opt/bio/sources/fsa-1.15.2
</code>

  * Once you are in ''/opt/bio/sources/fsa-1.15.2'', compiling is easy:

If you are compiling on a 32-bits platform
<code bash>
% sudo ./configure --with-mummer --with-exonerate CFLAGS=-m32 && sudo make
</code>

If you are compiling on a 64-bits platform
<code bash>
% sudo ./configure --with-mummer --with-exonerate && sudo make
</code>


  * To make sure everyon can use it:

<code bash>
% sudo ln -s /opt/bio/sources/fsa-1.15.2/src/main/fsa /usr/local/bin/fsa
</code>