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====== Installation of PhyML 3.0 ======

===== Additional libraries===== 

No additional library is required.

===== Procedure =====

You have to register on the website to get access to the executables and/or the source code (by contacting the author). Here is the procedure to install PhyML using the executable:

  * The archive with the various executables is downloaded in ''/home/bioubuntu'', decompressed and the newly created folder moved in ''/opt/bio/sources''.

  * This folder should belong to ''root'' and its permissions set to ''755''.

<code bash>
% sudo chown -R root:root /opt/bio/sources/PhyML_3.0
% sudo chmod 755 /opt/bio/sources/PhyML_3.0
</code>

  * Once you are in ''/opt/bio/sources/PhyML_3.0'', you simply have to make sure that the executable is available to all:

For x86_32 systems:

<code>
% sudo chmod ugo+x /opt/bio/sources/PhyML_3.0/PhyML_3.0_linux32
% sudo ln -s /opt/bio/sources/PhyML_3.0/PhyML_3.0_linux32 /usr/local/bin/phyml
</code>

For x86_64 systems:

<code>
% sudo chmod ugo+x /opt/bio/sources/PhyML_3.0/PhyML_3.0_linux64
% sudo ln -s /opt/bio/sources/PhyML_3.0/PhyML_3.0_linux64 /usr/local/bin/phyml
</code>