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====== Installation of Archeopteryx 4.1.04 ======

===== Additional libraries ===== 

Java, already installed.

===== Procedure =====

here is the procedure to install de Archeopteryx:

  * The application is contained in a JAR archive named ''forester.jar''. After downloading it, create a folder named ''archeopteryx'' in ''/home/bioubuntu'', put the JAR file in and move this folder to ''/opt/bio/sources'':

<code bash>
% mkdir archeopteryx
% mv forester.jar archeopteryx/
% sudo mv archeopteryx /opt/bio/sources
</code>

  * This folder should belong to ''root'' and its permissions set to ''755''.

<code bash>
% sudo chown -R root:root /opt/bio/sources/archeopteryx
% sudo chmod 755 /opt/bio/sources/archeopteryx
</code>

  * Get into ''/opt/bio/sources/archeopteryx''. To execute the JAR as an application, you need to create a very simple script named aptly enough ''archeopteryx'' and put the following lines in it:

<code>
#!/bin/sh
java -cp /opt/bio/sources/archaeopteryx/forester.jar org.forester.atv.ATV
</code>

  * To make it accessible to all, do this:
<code bash>
% sudo chmod 755 /opt/bio/sources/archeopteryx/archeopteryx
% sudo ln -s /opt/bio/sources/archeopteryx/archeopteryx /usr/local/bin/archeopteryx
</code>

  * To add Archeopteryx to the Impilo application menu, you need to edit the Xfce4 configuration file:

<code bash>
% sudo xfce4-menueditor /etc/xdg/xfce4/desktop/menu.xml
</code>

  * The three things to add are :
    * Item: Launcher
    * Name: Archeopteryx
    * Commande: archeopteryx